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Atlas of Computational Cell Reprogramming

Reproducibility

Supporting Information and reproduction materials

The review article is accompanied by Supporting Information tables and a bibliometric note. Rerunnable analyses are archived on Zenodo and maintained on GitHub. This page is a navigation hub; the journal and Zenodo copies are the authoritative records.

With the article (PLOS Supporting Information)

Article DOI: pending publication

Supporting Information files are self contained. They do not require access to this website or to GitHub to verify the headline statistics cited in the main text.

Archived reproduction package (Zenodo)

Scripts, query definitions, and outputs used to build Supporting Information Tables S1 to S3, Note S4, and Text S5 are archived at Zenodo:

The Zenodo deposit is a frozen snapshot at article acceptance. Cite the Zenodo DOI when referring to rerunnable materials.

Source repository (GitHub)

The same materials are maintained in version control for updates after publication:

This Atlas

The Atlas indexes the 58 method corpus, audit summaries, and taxonomy narratives. It links to the materials above but does not replace the journal Supporting Information or the Zenodo archive. Explore the audit overview, the method catalog, and the companion review outline.

Pipelines (in the Zenodo and GitHub packages)

Supporting item Pipeline folder
Note S4 (bibliometric) Bibliometric_Analysis/
Table S3 (dataset reuse) MappingDataReuseVisually/
Text S5 (four-level taxonomy) FourLevels/SI_5_Four_Levels_Taxonomy.tex
Tables S1 and S2 (curation) Manuscript supplementary tables and audit workbooks (see Zenodo README)