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Atlas of Computational Cell Reprogramming

Release history

Changelog

What changed, when, and why. Method additions, class re-placements, and audit refreshes are all tracked here.

Maintenance policy

The Atlas is a maintained index, not a one-time snapshot of the review corpus. When you add or update content:

  1. Bump ATLAS_RELEASE in src/lib/corpus.ts (e.g. v0.1.2 → v0.1.3 for minor updates; v0.2.0 for a batch of new methods or audit refresh).
  2. Add a changelog entry below with date, version, title, and a one-paragraph summary.
  3. Tag the git release to match ATLAS_RELEASE.
  4. Post-review methods: set added_after_review: true in the method YAML so the catalog separates them from the frozen review corpus.
  5. Major releases: export a Zenodo snapshot (method YAML, audit tables, site build) and update ATLAS_ZENODO_DOI in src/lib/publication.ts.

Current release: v0.1.2. Proposals from method authors are reviewed via /submit before integration.

Release log

  1. 2026-05-29 v0.1.2

    Two-corpus model and index status banner

    Distinguishes the 57-method review corpus (frozen in Supporting Information S1) from the maintained Atlas index. Home and /methods show a status banner with live counts; header shows compact index stats. Added added_after_review flag for post-publication entries. Release metadata centralized in src/lib/corpus.ts.

  2. 2026-05-29 v0.1.1

    Sync with 2026 submission materials

    Corpus updated to 57 reviewed methods (DeepNEU excluded from scope). Terminology aligned with manuscript explicitness classes (C0-C3). Audit headline numbers, SI descriptions, taxonomy prose, and import/sync script paths refreshed against 2026_Submission2Materials.

  3. 2026-05-24 v0.1

    Initial private preview

    Site scaffold, taxonomy and modality pages, sample method entries spanning C0-C3, field-level audit landing, contact-only submission page.